what do you understand with Transport and Messaging protocols in terms of Web Services?

Transport Protocols:
It is essential for the acceptance of Web Services that they are based on established Internet infrastructure. This in fact imposes the usage of of the HTTP, SMTP and FTP protocols based on the TCP/IP family of transports.

Messaging Protocol:
The format of messages exchanged between Web Services clients and Web Services should be vendor neutral and should not carry details about the technology used to implement the service. Also, the message format should allow for extensions and different bindings to specific transport protocols. SOAP and ebXML Transport are specifications which fulfill these requirements.